PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020051m
Common NameCARUB_v10020051mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 575aa    MW: 62574.1 Da    PI: 5.8446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020051mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.7e-31328386259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Carubv10020051m 328 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGNHNHP 386
                      7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-34312388IPR003657WRKY domain
SuperFamilySSF1182904.84E-28320388IPR003657WRKY domain
PROSITE profilePS5081129.792322388IPR003657WRKY domain
SMARTSM007742.4E-37327387IPR003657WRKY domain
PfamPF031065.0E-27329386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MDRGWSGLTL DSSSLDLLNP NNRIIAHNNN HRRFSNPLTT TTMSRIGDGD EDGDHNDQKT  60
KISTNGSEFR FPVSLSGIRD REDDDFSSGA AGDNDREVPG EVDFFSDKKS RVCREDDGGF  120
RVKKEEQDDR TDVNTGLNLR TTGNTKSDES MIDDGESSEM EDKRAKIELV KLQDELKRMT  180
MDNQKLRELL TQVSNSYTSL QMHLVSLMQQ QQEQQQSNNK VIEAAEKPEE TIVPRQFIDL  240
GPMRAAGDAG EVSNSSSDEK TRSGGSSPAN EVRDRKRLAR EETPETESNK VQKVNITNQS  300
TFDQSAAEAT MRKARVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMATGCP  360
VRKQVQRCAE DRSILITTYE GNHNHPLPPA AVAMASTTTA AANMLLSGSM SSHDGMMNPT  420
NLLARAVLPC STSMATISAS APFPTVTLDL THSSPPPTNG SNPSTSAAAT IDNNTQNNSL  480
MQRPQQQQQQ QQMGNLPPGM LPHVIGQALY NQSKFSGLQF SGGSPSTAAY SQSHAVADTI  540
TALTADPNFT AALAAVISSM INGSNHGEGN NKNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22314390176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302067.10.0hypothetical protein CARUB_v10020051mg
SwissprotQ9C5190.0WRKY6_ARATH; WRKY transcription factor 6
TrEMBLR0IA370.0R0IA37_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.2__246__AT1G62300.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.10.0WRKY family protein